by alan | Jan 20, 2021 | News, Publications
Our long-awaited cotranscriptional-folding paper, where we used SHAPE-SEQ data on the SRP RNA (pioneered longtime collaborator Julius Lucks at Northwestern) to constrain molecular dynamics simulations of RNA cotranscriptional folding just came out in Molecular Cell!...
by alan | Mar 19, 2020 | News
Parisa’s long-awaited paper with our collaborators at the Petzold lab (Karolinska Intitute, Sweden) , has just been officially accepted at Nature!!! It’s currently beign typeset, more details to follow.
by alan | Jun 22, 2019 | News
Thanks to a 5-year grant from NIH and an additional grant from the NSF, we anticipate needing to hire multiple computational researchers at all experience levels starting summer 2020, see positions for more details!
by alan | Jun 20, 2019 | News, Publications
2D-REMD method for folding RNA under sparse constraints Parisa and Simi’s paper is now out in METHODS: A two-dimensional replica-exchange molecular dynamics method for simulating RNA folding using sparse experimental...
by alan | Jun 20, 2019 | News, Publications
Chris’ new paper is out in J Phys Chem B!!! Congrats!!: CoSIMS: An Optimized Trajectory-Based Collision Simulator for Ion Mobility...
by alan | Mar 14, 2017 | News
Alan is fortunate to have been awarded a 5-year NSF CAREER award for his project: “Predicting high-resolution RNA tertiary structures using an experimentally callibrated force-field for RNA folding”. This exciting development will finally allow us to test...
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