New paper out in METHODS
2D-REMD method for folding RNA under sparse constraints Parisa and Simi’s paper is now out in METHODS: A two-dimensional replica-exchange molecular dynamics method for simulating RNA folding using sparse experimental...New paper out in J Phys Chem B!!
Chris’ new paper is out in J Phys Chem B!!! Congrats!!: CoSIMS: An Optimized Trajectory-Based Collision Simulator for Ion Mobility...
New Review Article out in WIRES RNA!!!
Our new review article is out in WIRES RNA!!! Great work, Sweta and Sri! Vangaveti Sweta, Ranganathan Srivathsan V., Chen Alan A.. Advances in RNA molecular dynamics: a simulator’s guide to RNA force fields. WIREs RNA 2017, 8: doi:...
New paper in Langmuir on DNA-graphene interactions
Sri’s paper detailing how DNA adsorbs to graphene is now out in Langmuir!
New paper out in RNA using simulations to interpreting RNA SHAPE experiments!
New paper out in RNA with Julius Lucks (Northwestern) using MD to interpret SHAPE-seq experiments for designing transcriptional attenuators.
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